Diego Martínez Hernández

Phone: 981 563100 - ext. 23241
Fax: 981 528012
E-mail: diego.martinez[at]usc.es

Research interest: Terminology and ontology mapping, archetypes, knowledge representation, ontology design, semantic integration.

Research projects:

Medical Terminology Management for Archetypes / Gestión de Terminologías Médicas para Arquetipos (MICINN TIN2009-14159-C05-05)

Publications

 2013

• Allones, JL., Taboada, M., Martínez, D., Lozano, R., Sobrido, M.J. "SNOMED CT module-driven clinical archetype management". Journal of Biomedical Informatics (available online February 2013).
   
• Allones, JL., Penas, D., Taboada, M. and Martínez, D. and Tellado,S. "A study of semantic proximity between archetype terms based on SNOMED CT relationships". Lecture Notes in Computer Science Volume 7738, 2013, pp 98-112.
   

 2012

• Taboada, M., Martínez, D., Pilo, B., Jiménez-Escrig, A., Robinson, P.N., Sobrido, M.J. "Querying phenotype-genotype relationships on patient datasets using semantic web technology: the example of Cerebrotendinous Xanthomatosis". BMC Medical Informatics and Decision Making 2012, 12:78 (doi:10.1186/1472-6947-12-78).
   
• Meizoso, M., Allones, JL., Martínez, D., Taboada, M. "Semantic similarity-based alignment between clinical archetypes and SNOMED CT: An application to observations". International Journal of Medical Informatics, 81(8): 566–578, 2012.
   
• Taboada, M., Meizoso, M., Martínez, D., Riaño, D. and Alonso, A. "COMBINING OPEN-SOURCE NLP TOOLS TO PARSE CLINICAL PRACTICE GUIDELINES". Expert Systems. The Journal of Knowledge Engineering, (in press), 2012 . Wiley Online Library
   
• Allones, JL., Penas, D., Taboada, M. and Martínez, D. and Tellado,S. "A study of semantic proximity between archetype terms based on SNOMED CT relationships". Proceedings of Joint Workshop on Process-oriented Information Systems in Healthcare (ProHealth'12) and Knowledge Representation for Health Care (KRH4C'12), 3 September 2012, Tallinn, Estonia. Presentation.
   
• Allones, JL., Meizoso, M., Taboada, M. and Martínez, D. and Tellado,S. "Combining lexical and structure-based methods to align clinical archetypes to SNOMED CT". Presented at the 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems, 12 September 2012, San Sebastian, Spain. Future Technology Publications, Vol.2(1), pp 27-32, 2012. Poster
   
• Allones, JL., Taboada, M., Meizoso, M., Martínez, D., and Tellado, S. "Combining mapping methods to align clinical archetypes to SNOMED CT". Proceedings of the 10th Terminology and Knowledge Engineering Conference (TKE 2012), pp.326-328. 19-22 June 2012, Madrid, Spain.
   

 2011

• Meizoso, M., Allones, JL., Taboada, M., Martínez, D. and Tellado, S. "Automated mapping of observation archetypes to SNOMED CT concepts". Proc. of the 4th international conference on Interplay between natural and artificial computation. Lecture Notes in Computer Science, 6686, pp. 550-561, 2011.
   

 2010

• Taboada, M., Meizoso, M., Riaño, D., Alonso, A. and Martínez, D "From Natural Language Descriptions in Clinical Guidelines to Relationships in an Ontology". Lecture Notes in Artificial Intelligence 5943, pp. 26-37, 2010.
   

 2009

• Taboada, M., Lalín, R., Martínez, D "AN AUTOMATED APPROACH TO MAPPING EXTERNAL TERMINOLOGIES TO THE UMLS". IEEE Transactions on Biomedical Engineering 56, pp. 1598-1605, 2009. Pubmed
   
• Taboada, M., Meizoso, M., Martínez, D and Tellado, S "A STUDY OF APPLYING KNOWLEDGE MODELLING TO EVIDENCE-BASED GUIDELINES". Lecture Notes in Computer Science 5601, pp. 437-446, 2009.
   
• Taboada, M., Meizoso, M., Martínez, D and Tellado, S "A STUDY OF EXTRACTING KNOWLEDGE FROM CLINICAL PRACTICE GUIDELINE DOCUMENTS". Lecture Notes in Computer Science 5717, pp. 195-202, 2009.
   
• Taboada, M., Lalín, R., Martínez, D "A method to reconcile biomedical terminologies". Proceedings of the First Symposium on Healthcare Systems Interoperability Organized by the OpenHealth-Spain group Alcalá de Henares,pp.86-91, Madrid, Spain, April 2009. Scribd
   

 2008

• Taboada, M., Meizoso, M., Martínez, D and Des, J. "Using Lexical, Terminological and Ontological Resources for Entity Recognition Tasks in the Medical Domain". D. Riaño (Ed.): K4CARE 2007, LNAI 4924, pp. 21–31, 2008.
   

 2007

• Taboada, M., Lalín, R., Martínez, D and Tellado, S. "Effectiveness Study of Lexically Mapping Two Thesauri". D. Borrajo, L. Castillo, and J.M. Corchado (Eds.): CAEPIA 2007, LNAI 4788, pp. 268–277, 2007.
   

 2006

• Taboada, M. , Des, J., Martínez, D. and Mira, J. "A study of applying knowledge modelling to evidence-based guidelines". Proc. of the Workshop on AI techniques in healthcare: evidence-based guidelines and protocols, (ECAI-06), pp. 95-100, 2006.
   

 2005

• Taboada, M., Martínez, D. and Mira, J. "Experiences in reusing knowledge sources using Protégé and Prompt. An application in a medical domain.". International Journal of Human-Computer Studies, 62:597-618, 2005. Available as KEAM technical report KEAM-2004-1
   
• Taboada, M. , Des, J., Martínez, D. and Mira, J. "Aligning Reference Terminologies and Knowledge Bases in the Health Care Domain". Lect. Not. in Computer Science, 3561, 437-447, 2005. Available as KEAM technical report KEAM-2005-1
   
• Taboada, M. , Martínez, D. and Des, J. "El papel de la Inteligencia Artificial en la enseñanza de la resolución de problemas clínicos". In Las TIC en el Aula, Anaya Ed. (ISBN: 84-689-2377-X, Nº registro: 05/36949), 2005.
   

 2004

• Taboada, M., González, J.L., Argüello, M., Des, J., Mira, J. and Martínez, D. "Adquisición de conocimiento médico para aplicaciones en telemedicina". In Telemedicina. Aplicaciones y nuevas tecnologías. F. Gonzalez y C. Zamarrón (ed.), Sociedad Gallega de Telemedicina, 2004. Available as KEAM technical report KEAM-2004-2
   

 2003

• Taboada, M., Martínez, D. and Mira, J. "Modelling knowledge-bases by reuse: a case study". International Journal of Knowledge-Based Intelligent Engineering Systems , 7 (4): 190-197, 2003. Available as KEAM technical report KEAM-2003-3
   
• Martínez, D., Taboada, M. and Mira, J. "Knowledge Base Development". Lect. Not. in Artificial Intelligence, 2774, 1373-80, 2003. Available as KEAM technical report KEAM-2003-2
   
• Taboada, M. and Argüello, M. and Des, J. and Mira, J. and Martínez, D. and Marín, R. "Building Knowledge-Based Intelligent Systems by reusing". In Innovations in KE, International Series on Advanced Intelligence, 82, 1-30. Advanced Knowledge International Pty Ltd, 2003. Available as KEAM technical report KEAM-2003-1
   

 2002

• Taboada, M. and Martínez, D. and Marín, R., and Palacios, F. "Combining guidelines and problem-solving problems for modelling therapy planning in medicine". I Workshop sobre Planificación, Scheduling y Razonamiento Temporal. Iberamia, Noviembre, Sevilla, 2002. Castillo et al. (Eds.). ISBN: 84-95499-89-4. Available as KEAM technical report KEAM-2002-4
   
• Taboada, M. and Argüello, M. and Martínez, D. and Des, J. and Mira, J."Modelling Knowledge Bases by Reuring Generic Ontologies and Unified Terminology Servers" In Knowledge-Based Intelligent Information Engineering Systems & Allied Tecnologies. Damiani et al. (Eds.). Frontiers in Artificial Intelligence and Applications, Vol. 82. IOS-Press, 2002. Available as KEAM technical report KEAM-2002-3
   
• Taboada, M. and Argüello, M. and Des, J. and Mira, J. and Martínez, D. "Heuristic reasoning services for medical environments" In Sotfware Engineering, Artificial Intelligence, Networking and Parallel/Distributed Computing. A. Moreno, R. Lee, N. Juristo and Barry Boehm (Eds.). Servicio de Publicaciones de la Fundación General de la U.P.M. Madrid, Spain, 2002. Available as KEAM technical report KEAM-2002-2
   
• Taboada, M. and Argüello, M. and Martínez, D. and Des, J. and Mira, J. "A use case for DAML+OIL: a knowledge base in a clinical domain". In Proceedings of the International Workshop on Rule Markup Languages for Business Rules on the Semantic Web. Michael Schroeder and Gerd Wagner (Eds.), Sardinia, Italy, June 14, 2002. CEUR-WS Publication http://CEUR-WS.org/Vol-60/